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cdna of a woodchuck hepatitis virus post-transcriptional regulatory element (wpre)  (Addgene inc)


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    Structured Review

    Addgene inc cdna of a woodchuck hepatitis virus post-transcriptional regulatory element (wpre)
    Cdna Of A Woodchuck Hepatitis Virus Post Transcriptional Regulatory Element (Wpre), supplied by Addgene inc, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/cdna+elements/cdna+of+a+woodchuck+hepatitis+virus+post+transcriptional+regulatory+element++wpre+/pmc10555477-62-2-20
    Average 90 stars, based on 1 article reviews
    cdna of a woodchuck hepatitis virus post-transcriptional regulatory element (wpre) - by Bioz Stars, 2026-11
    90/100 stars

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    Related Articles

    cDNA Synthesis:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Quantitative RT-PCR:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Reverse Transcription Polymerase Chain Reaction:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Polymerase Chain Reaction:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    SYBR Green Assay:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Real-time Polymerase Chain Reaction:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Methylation:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Purification:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Staining:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Silver Staining:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Protein-Protein interactions:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    RNA Sequencing:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Recombinant:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    CRISPR:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCD58(GCAGCAGGCAGACCACGCTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-BFP-2A-BFP , This study , N/A. .. Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: .. Materials availability The transporter-focused CRISPR-Cas9 KO library (#221409), an ABC transporter-focused CRISPR-Cas9 KO sub-library (#221410), and the SLC-focused cDNA library (#213694) are available at Addgene under the respective accession numbers. .. Gateway-compatible donor vectors encoding individual SLC and ABC transporters have been deposited as part of a plasmid collection at Addgene (https://www.addgene.org/RESOLUTE_Consortium/).

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLKO.1 puro , Addgene , Cat #8453.

    Plasmid Preparation:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCD58(GCAGCAGGCAGACCACGCTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-BFP-2A-BFP , This study , N/A. .. Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLKO.1 puro , Addgene , Cat #8453.

    Software:

    Article Title: C2H2-zinc-finger transcription factors bind RNA and function in diverse post-transcriptional regulatory processes.
    Article Snippet: In brief Nabeel-Shah et al. report that transcription factors of the C2H2-ZNF family also function as RNA-binding proteins that participate in multiple posttranscriptional processes, including alternative splicing, alternative polyadenylation, and mA regulation.. Integration of C2H2-ZNF iCLIP-seq data with other omics data reveals multiple modes of RNA binding by C2H2-ZNFs and uncovers mechanistic details.

    Sequencing:

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCD58(GCAGCAGGCAGACCACGCTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-BFP-2A-BFP , This study , N/A. .. Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLKO.1 puro , Addgene , Cat #8453.

    Knock-Out:

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCD58(GCAGCAGGCAGACCACGCTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-BFP-2A-BFP , This study , N/A. .. Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgNT (non-targeting)(GTATTACTG ATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#1 (CCGGGTCCTCCTCCGTAGTG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiCRISPRv2-sgCMTM6#2 (TCACAATGTACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiCRISPRv2-sgPD-L1(CACCACCAATTCCAAGAGAG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178.

    Article Title: CMTM6 shapes antitumor T cell response through modulating protein expression of CD58 and PD-L1
    Article Snippet: Plasmid: pLentiGuide-GFP-2A-Puro-sgNT (non-targeting) (GTATTACTGATATTGGTGGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLentiGuide-BFP-2A-Puro-sgCMTM6#2 (TCACAATGT ACTTTATGTGG) , This study , sgRNA sequence is extracted from Human CRISPR Knockout Pooled Library (Brunello) Addgene: 73178. .. Plasmid: pLKO.1 puro , Addgene , Cat #8453.

    Multiple Displacement Amplification:

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Library Amplification:

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Clone Assay:

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Multiplex Assay:

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    cDNA Library Assay:

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: The IMI2 Joint Undertaking receives support from the European Union’s Horizon 2020 research and innovation program; European Federation of Pharmaceutical Industries and Associations (EFPIA) companies; and associated partners KTH, OICR, Diamond, and McGill. .. REAGENT or RESOURCE SOURCE IDENTIFIER Experimental models: cell lines Human: HAP1 Horizon Discovery Cat# C631; RRID: CVCL_Y019 Human: HuH-7 JCRB Cat# JCRB0403; RRID: CVCL_0336 Human: 1321N1 ECACC through SIGMA Cat# 86030402-1VL; RRID: CVCL_0110 Human: SK-MEL-28 LGCgenomics through ATCC Cat# HTB-72; RRID: CVCL_0526 Human: HCT116 ATCC Cat# CCL-247; RRID: CVCL_0291 Human: LS180 ECACC through SIGMA Cat# 87021202-1VL; RRID: CVCL_0397 Human: MDA-MB-468 ATCC Cat# HTB-132; RRID: CVCL_0419 Oligonucleotides Library amplification primer This paper N/A sgRNA sequences for individual KO clones This paper N/A sgRNA sequences for KO library This paper N/A NEBNext Multiplex Oligos for Illumina New England Biolabs Cat# E7600 Recombinant DNA Toronto KnockOut CRISPR Library TKOv3 Hart et al.73 Addgene plasmid library, Cat# 90294 Transporter-focused KO library This paper Addgene plasmid library, Cat# 221409 SLC cDNA library This paper Addgene plasmid library, Cat# 213694 pENTR-ABCC1_STOP This paper Addgene plasmid, Cat# 221423 pENTR-ABCB1_STOP This paper Addgene plasmid, Cat# 221424 pENTR-ABCF2_STOP This paper Addgene plasmid, Cat# 221425 pLIX_401 (pCW57.1) pCW57.1 was a gift from David Root (distributed by Addgene) Addgene plasmid, Cat# 41393 Software and algorithms Cutadapt Martin et al.74 https://github.com/marcelm/cutadapt/blob/ main/doc/guide.rst MAGeCK Li et al.75 https://github.com/liulab-dfci/MAGeCK DESeq2 Love et al.76 https://github.com/thelovelab/DESeq2 Enrichr Xie et al.77 https://maayanlab.cloud/Enrichr/ Galaxy platform The Galaxy community78 https://usegalaxy.org .. Cell lines and culture conditions HAP1 (sex: male origin but no Y chromosome in haploid state, RRID:CVCL_Y019), HuH-7 (sex: male, RRID:CVCL_0336), 1321N1 (sex: male, RRID:CVCL_0110) and SK-MEL-28 (sex: male, RRID:CVCL_0526) cells were cultivated in DMEM (D5796 Sigma) supplemented with 10% Fetal Bovine Serum (10270–106, Lot 42F8381K, Gibco) and Penicillin-Streptomycin (Cat#15140–122, Gibco).

    Article Title: The efflux pump ABCC1/MRP1 constitutively restricts PROTAC sensitivity in cancer cells.
    Article Snippet: .. Materials availability The transporter-focused CRISPR-Cas9 KO library (#221409), an ABC transporter-focused CRISPR-Cas9 KO sub-library (#221410), and the SLC-focused cDNA library (#213694) are available at Addgene under the respective accession numbers. .. Gateway-compatible donor vectors encoding individual SLC and ABC transporters have been deposited as part of a plasmid collection at Addgene (https://www.addgene.org/RESOLUTE_Consortium/).



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    Image Search Results


    Journal: BMC Bioinformatics

    Article Title: Differential prioritization between relevance and redundancy in correlation-based feature selection techniques for multiclass gene expression data

    doi: 10.1186/1471-2105-7-320

    Figure Lengend Snippet: Most frequently selected genes for the GCM dataset.

    Article Snippet: 19 , EST: ab17g09.s1 Stratagene lung (#937210) Homo sapiens cDNA clone 841120 3' similar to contains LTR7.b2 LTR7 repetitive element ;, mRNA sequence. (from Genbank) , Ranked #10 in the OVA marker list for the lung cancer class in [2] , M.

    Techniques: Sequencing, Marker